Here is a list of all class members with links to the classes they belong to:
- w -
- w0_ : PLMD::isdb::Rescale
- wait() : PLMD::Atoms, PLMD::Communicator::Request
- waitData() : PLMD::PlumedMain
- walker_rank_ : PLMD::opes::OPESexpanded, PLMD::opes::OPESmetad< mode >
- walkers_mpi_ : PLMD::bias::MetaD, PLMD::bias::PBMetaD
- warning() : PLMD::Action
- wascleared : PLMD::vesselbase::AveragingVessel
- wasForced() : PLMD::gridtools::GridVessel
- wasforced : PLMD::gridtools::GridVessel
- wasreset() : PLMD::vesselbase::AveragingVessel
- watch : PLMD::Stopwatch::Handler
- watches : PLMD::Stopwatch
- WATERS : PLMD::membranefusion::fusionPoreExpansionP, PLMD::membranefusion::fusionPoreNucleationP
- wave : PLMD::molfile::molfile_qm_timestep_t
- wave_coeffs : PLMD::molfile::molfile_qm_wavefunction_t
- wavef_size : PLMD::molfile::molfile_qm_metadata_t, PLMD::molfile::molfile_qm_timestep_metadata
- waveletGrid_ : PLMD::ves::BF_Wavelets
- wavenumbers : PLMD::molfile::molfile_qm_hessian_t
- weight : PLMD::colvar::ContactMap, PLMD::logmfd::LogMFD
- weight_mass : PLMD::vatom::Center
- weight_vals : PLMD::analysis::ReadAnalysisFrames
- weightHasDerivatives : PLMD::vesselbase::ActionWithVessel, PLMD::vesselbase::StoreDataVessel
- weights : PLMD::analysis::ReadAnalysisFrames, PLMD::analysis::ReadDissimilarityMatrix, PLMD::dimred::SketchMapRead, PLMD::function::annfunc::ANN, PLMD::generic::FitToTemplate, PLMD::gridtools::ActionWithGrid, PLMD::mapping::Mapping, PLMD::MultiDomainRMSD, PLMD::ReferenceArguments, PLMD::vatom::Center, PLMD::vesselbase::ActionWithAveraging
- weights_ : PLMD::ves::TD_ExponentiallyModifiedGaussian, PLMD::ves::TD_Gaussian, PLMD::ves::TD_GeneralizedNormal, PLMD::ves::TD_LinearCombination, PLMD::ves::TD_VonMises
- weights_calculated : PLMD::analysis::ReadAnalysisFrames
- weightsCalculated : PLMD::bias::ReweightWham
- weightWithDerivatives() : PLMD::vesselbase::ActionWithVessel
- welltemp_ : PLMD::bias::MetaD, PLMD::bias::PBMetaD
- WellTemperedModifer() : PLMD::ves::WellTemperedModifer
- wfile : PLMD::analysis::ReadDissimilarityMatrix
- wgridstride_ : PLMD::bias::MetaD, PLMD::bias::PBMetaD
- wham_pointer : PLMD::analysis::ReadAnalysisFrames
- WhamHistogram() : PLMD::analysis::WhamHistogram
- WhamWeights() : PLMD::analysis::WhamWeights
- what() : PLMD::Exception, PLMD::lepton::Exception, plumed_error
- what_buffer : plumed_error
- which_cluster : PLMD::adjmat::ClusteringBase, PLMD::adjmat::OutputCluster
- Whitespace : PLMD::lepton::ParseToken
- WholeMolecules() : PLMD::generic::WholeMolecules
- width : PLMD::drr::UIestimator::n_matrix, PLMD::drr::UIestimator::n_vector< T >, PLMD::drr::UIestimator::UIestimator, PLMD::HistogramBead, PLMD::KernelFunctions
- work : PLMD::bias::MaxEnt, PLMD::bias::MovingRestraint, PLMD::logmfd::LogMFD, PLMD::PlumedMain
- work_ : PLMD::bias::MetaD, PLMD::opes::OPESexpanded, PLMD::opes::OPESmetad< mode >, PLMD::ves::VesDeltaF
- workspace : PLMD::lepton::CompiledExpression
- WrapAround() : PLMD::generic::WrapAround
- write_1D_pmf() : PLMD::drr::UIestimator::UIestimator
- write_angles : PLMD::molfile::molfile_plugin_t
- write_bonds : PLMD::molfile::molfile_plugin_t
- write_files() : PLMD::drr::UIestimator::UIestimator
- write_final_positions() : PLMD::cltools::SimpleMD
- write_model_overlap() : PLMD::isdb::EMMI
- write_positions() : PLMD::cltools::SimpleMD
- write_positions_first : PLMD::cltools::SimpleMD
- write_statistics() : PLMD::cltools::SimpleMD
- write_statistics_first : PLMD::cltools::SimpleMD
- write_statistics_fp : PLMD::cltools::SimpleMD
- write_statistics_fp_deleter : PLMD::cltools::SimpleMD
- write_statistics_last_time_reopened : PLMD::cltools::SimpleMD
- write_stride_ : PLMD::isdb::Metainference, PLMD::isdb::MetainferenceBase
- write_structure : PLMD::molfile::molfile_plugin_t
- write_timestep : PLMD::molfile::molfile_plugin_t
- write_volumetric_data : PLMD::molfile::molfile_plugin_t
- writeBasisFunctionsToFile() : PLMD::ves::BasisFunctions
- writeBiasGridToFile() : PLMD::ves::LinearBasisSetExpansion
- writeBiasOutputFiles() : PLMD::ves::Optimizer
- writeBiasToFile() : PLMD::ves::VesBias, PLMD::ves::VesLinearExpansion
- writeBiasWithoutCutoffGridToFile() : PLMD::ves::LinearBasisSetExpansion
- writeBinary() : PLMD::Atoms
- writeCoeffsInfoToFile() : PLMD::ves::CoeffsBase
- writeCubeFile() : PLMD::GridBase
- writeDataDiagonalToFile() : PLMD::ves::CoeffsMatrix
- writeDataFullToFile() : PLMD::ves::CoeffsMatrix
- writeDataToFile() : PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector
- writeFesGridToFile() : PLMD::ves::LinearBasisSetExpansion
- writeFesOutputFiles() : PLMD::ves::Optimizer
- writeFesProjGridToFile() : PLMD::ves::LinearBasisSetExpansion
- writeFesProjOutputFiles() : PLMD::ves::Optimizer
- writeFesProjToFile() : PLMD::ves::VesBias, PLMD::ves::VesLinearExpansion
- writeFesToFile() : PLMD::ves::VesBias, PLMD::ves::VesLinearExpansion
- writeGaussian() : PLMD::bias::MetaD, PLMD::bias::PBMetaD
- writehead() : PLMD::drr::UIestimator::UIestimator
- writeHeader() : PLMD::GridBase
- writeHeaderToFile() : PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector
- writeIterationCounterAndTimeToFile() : PLMD::ves::CoeffsBase
- WriteLagrangians() : PLMD::bias::MaxEnt
- writeLogTargetDistGridToFile() : PLMD::ves::LinearBasisSetExpansion
- writeMatrixInfoToFile() : PLMD::ves::CoeffsMatrix
- writeOutObservable() : PLMD::fisst::FISST
- writeOutputFiles() : PLMD::ves::Optimizer
- writeOutRestart() : PLMD::eds::EDS, PLMD::fisst::FISST
- WriteStateFull() : PLMD::Random
- writeStatus() : PLMD::isdb::Metainference, PLMD::isdb::MetainferenceBase
- writeTargetDistGridToFile() : PLMD::ves::LinearBasisSetExpansion
- writeTargetDistOutputFiles() : PLMD::ves::Optimizer
- writeTargetDistProjGridToFile() : PLMD::ves::LinearBasisSetExpansion
- writeTargetDistProjOutputFiles() : PLMD::ves::Optimizer
- writeTargetDistProjToFile() : PLMD::ves::VesBias, PLMD::ves::VesLinearExpansion
- writeTargetDistributionToFile() : PLMD::ves::LinearBasisSetExpansion
- writeTargetDistToFile() : PLMD::ves::VesBias, PLMD::ves::VesLinearExpansion
- writeTimeInfoToFile() : PLMD::ves::CoeffsBase
- writeToFile() : PLMD::Grid, PLMD::GridBase, PLMD::SparseGrid, PLMD::ves::CoeffsMatrix, PLMD::ves::CoeffsVector
- written : PLMD::drr::UIestimator::UIestimator
- written_1D : PLMD::drr::UIestimator::UIestimator
- wStateStride_ : PLMD::opes::OPESexpanded, PLMD::opes::OPESmetad< mode >
- wstride : PLMD::mapping::AdaptivePath
- wsum : PLMD::mapping::AdaptivePath
- wsum_ : PLMD::eds::EDS
- ww : PLMD::analysis::Histogram