Inheritance diagram for PLMD::vesselbase::Histogram:

Public Member Functions
	Histogram (const VesselOptions &da)

bool	applyForce (std::vector< double > &forces) override
	Retrieve the forces on the quantities in the vessel.

void	calculate (const unsigned &taskCode, MultiValue &myvals, std::vector< double > &buffer, std::vector< unsigned > &der_index) const override
	Calculate the part of the vessel that is done in the loop.

void	checkRead ()
	Check that readin was fine.

std::string	description () override
	Return a description of the vessel contents.

void	finish (const std::vector< double > &buffer) override
	Complete the calculation once the loop is finished.

std::string	getLabel () const
	Return the label.

std::string	getName () const
	Return the name.

virtual void	prepare ()
	Do something before the loop.

void	resize () override
	Reset the size of the buffers.

virtual void	setBufferStart (unsigned &start)
	Set the start of the buffer.

virtual MultiValue &	transformDerivatives (const unsigned &current, MultiValue &myvals, MultiValue &bvals)
	This is replaced in bridges so we can transform the derivatives.

Static Public Member Functions
static void	registerKeywords (Keywords &keys)

static void	reserveKeyword (Keywords &keys)

static std::string	transformName (const std::string &name)
	Convert the name to the label of the component.

Protected Member Functions
void	addVessel (const std::string &name, const std::string &intput)

void	error (const std::string &errmsg)
	Report an error.

ActionWithVessel *	getAction () const
	Return a pointer to the action we are working in.

std::string	getAllInput ()
	This returns the whole input line (it is used for less_than/more_than/between)

double	getNLTolerance () const
	Return the value of the neighbor list tolerance.

int	getNumericalLabel () const
	Return the numerical label.

unsigned	getSizeOfBuffer () const
	Return the size of the buffer.

double	getTolerance () const
	Return the value of the tolerance.

template<class T>
void	parse (const std::string &key, T &t)
	Parse something from the input.

void	parseFlag (const std::string &key, bool &t)
	Parse one keyword as boolean flag.

template<class T>
void	parseVector (const std::string &key, std::vector< T > &t)
	Parse one keyword as std::vector.

void	resizeBuffer (const unsigned &n)
	Set the size of the data buffer.

Protected Attributes
unsigned	bufstart
	The start of this Vessel's buffer in buffer in the underlying ActionWithVessel.

Private Attributes
ActionWithVessel *	action
	The action that this vessel is created within.

unsigned	bufsize
	The number of elements in this vessel's buffered data.

bool	finished_read
	This just checks we have done checkRead.

const PLMD::Keywords &	keywords
	The keywords.

std::vector< std::string >	line
	Directive line.

std::string	mylabel
	The label for the vessel for referencing.

std::string	myname
	The keyword for the vessel in the input file.

const int	numlab
	The numerical label for this object.

Constructor & Destructor Documentation

◆ Histogram()

PLMD::vesselbase::Histogram::Histogram ( const VesselOptions & da )

explicit

Member Function Documentation

◆ addVessel()

void PLMD::vesselbase::ShortcutVessel::addVessel	(	const std::string &	name,
		const std::string &	intput )

protectedinherited

◆ applyForce()

bool PLMD::vesselbase::ShortcutVessel::applyForce ( std::vector< double > & forces )

inlineoverridevirtualinherited

Retrieve the forces on the quantities in the vessel.

Implements PLMD::vesselbase::Vessel.

◆ calculate()

void PLMD::vesselbase::ShortcutVessel::calculate	(	const unsigned &	current,
		MultiValue &	myvals,
		std::vector< double > &	buffer,
		std::vector< unsigned > &	der_list ) const

inlineoverridevirtualinherited

Calculate the part of the vessel that is done in the loop.

Implements PLMD::vesselbase::Vessel.

◆ checkRead()

void PLMD::vesselbase::Vessel::checkRead ( )

inherited

Check that readin was fine.

◆ description()

std::string PLMD::vesselbase::ShortcutVessel::description ( )

inlineoverridevirtualinherited

Return a description of the vessel contents.

Implements PLMD::vesselbase::Vessel.

◆ error()

void PLMD::vesselbase::Vessel::error ( const std::string & errmsg )

protectedinherited

Report an error.

◆ finish()

void PLMD::vesselbase::ShortcutVessel::finish ( const std::vector< double > & )

inlineoverridevirtualinherited

Complete the calculation once the loop is finished.

Implements PLMD::vesselbase::Vessel.

◆ getAction()

ActionWithVessel * PLMD::vesselbase::Vessel::getAction ( ) const

inlineprotectedinherited

Return a pointer to the action we are working in.

◆ getAllInput()

std::string PLMD::vesselbase::Vessel::getAllInput ( )

protectedinherited

This returns the whole input line (it is used for less_than/more_than/between)

◆ getLabel()

std::string PLMD::vesselbase::Vessel::getLabel ( ) const

inherited

Return the label.

◆ getName()

std::string PLMD::vesselbase::Vessel::getName ( ) const

inherited

Return the name.

◆ getNLTolerance()

double PLMD::vesselbase::Vessel::getNLTolerance ( ) const

inlineprotectedinherited

Return the value of the neighbor list tolerance.

◆ getNumericalLabel()

int PLMD::vesselbase::Vessel::getNumericalLabel ( ) const

inlineprotectedinherited

Return the numerical label.

◆ getSizeOfBuffer()

unsigned PLMD::vesselbase::Vessel::getSizeOfBuffer ( ) const

inlineprotectedinherited

Return the size of the buffer.

◆ getTolerance()

double PLMD::vesselbase::Vessel::getTolerance ( ) const

inlineprotectedinherited

Return the value of the tolerance.

◆ parse()

template<class T>

void PLMD::vesselbase::Vessel::parse	(	const std::string &	key,
		T &	t )

protectedinherited

Parse something from the input.

◆ parseFlag()

void PLMD::vesselbase::Vessel::parseFlag	(	const std::string &	key,
		bool &	t )

protectedinherited

Parse one keyword as boolean flag.

◆ parseVector()

template<class T>

void PLMD::vesselbase::Vessel::parseVector	(	const std::string &	key,
		std::vector< T > &	t )

protectedinherited

Parse one keyword as std::vector.

◆ prepare()

virtual void PLMD::vesselbase::Vessel::prepare ( )

inlinevirtualinherited

Do something before the loop.

Reimplemented in PLMD::mapping::SpathVessel, and PLMD::vesselbase::BridgeVessel.

◆ registerKeywords()

void PLMD::vesselbase::Histogram::registerKeywords ( Keywords & keys )

static

◆ reserveKeyword()

void PLMD::vesselbase::Histogram::reserveKeyword ( Keywords & keys )

static

◆ resize()

void PLMD::vesselbase::ShortcutVessel::resize ( )

inlineoverridevirtualinherited

Reset the size of the buffers.

Implements PLMD::vesselbase::Vessel.

◆ resizeBuffer()

void PLMD::vesselbase::Vessel::resizeBuffer ( const unsigned & n )

inlineprotectedinherited

Set the size of the data buffer.

◆ setBufferStart()

void PLMD::vesselbase::Vessel::setBufferStart ( unsigned & start )

inlinevirtualinherited

Set the start of the buffer.

Reimplemented in PLMD::vesselbase::BridgeVessel.

◆ transformDerivatives()

MultiValue & PLMD::vesselbase::Vessel::transformDerivatives	(	const unsigned &	current,
		MultiValue &	myvals,
		MultiValue &	bvals )

inlinevirtualinherited

This is replaced in bridges so we can transform the derivatives.

Reimplemented in PLMD::vesselbase::BridgeVessel.

◆ transformName()

std::string PLMD::vesselbase::Vessel::transformName ( const std::string & name )

staticinherited

Convert the name to the label of the component.

Member Data Documentation

◆ action

ActionWithVessel* PLMD::vesselbase::Vessel::action

privateinherited

The action that this vessel is created within.

◆ bufsize

unsigned PLMD::vesselbase::Vessel::bufsize

privateinherited

The number of elements in this vessel's buffered data.

◆ bufstart

unsigned PLMD::vesselbase::Vessel::bufstart

protectedinherited

The start of this Vessel's buffer in buffer in the underlying ActionWithVessel.

◆ finished_read

bool PLMD::vesselbase::Vessel::finished_read

privateinherited

This just checks we have done checkRead.

◆ keywords

const PLMD::Keywords& PLMD::vesselbase::Vessel::keywords

privateinherited

The keywords.

◆ line

std::vector<std::string> PLMD::vesselbase::Vessel::line

privateinherited

Directive line.

This line is progressively erased during vessel construction so as to check if all the present keywords are correct.

◆ mylabel

std::string PLMD::vesselbase::Vessel::mylabel

privateinherited

The label for the vessel for referencing.

◆ myname

std::string PLMD::vesselbase::Vessel::myname

privateinherited

The keyword for the vessel in the input file.

◆ numlab

const int PLMD::vesselbase::Vessel::numlab

privateinherited

The numerical label for this object.

The documentation for this class was generated from the following file:

vesselbase/Histogram.cpp

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Attributes

Constructor & Destructor Documentation

◆ Histogram()

Member Function Documentation

◆ addVessel()

◆ applyForce()

◆ calculate()

◆ checkRead()

◆ description()

◆ error()

◆ finish()

◆ getAction()

◆ getAllInput()

◆ getLabel()

◆ getName()

◆ getNLTolerance()

◆ getNumericalLabel()

◆ getSizeOfBuffer()

◆ getTolerance()

◆ parse()

◆ parseFlag()

◆ parseVector()

◆ prepare()

◆ registerKeywords()

◆ reserveKeyword()

◆ resize()

◆ resizeBuffer()

◆ setBufferStart()

◆ transformDerivatives()

◆ transformName()

Member Data Documentation

◆ action

◆ bufsize

◆ bufstart

◆ finished_read

◆ keywords

◆ line

◆ mylabel

◆ myname

◆ numlab