| addAtomsDerivatives(const unsigned &, const unsigned &, const Vector &) | PLMD::multicolvar::AtomValuePack | inlineprivate |
| addBoxDerivatives(const unsigned &, const Tensor &) | PLMD::multicolvar::AtomValuePack | inline |
| addComDerivatives(const int &, const Vector &, const CatomPack &) | PLMD::multicolvar::AtomValuePack | |
| addDerivative(const unsigned &, const unsigned &, const double &) | PLMD::multicolvar::AtomValuePack | inline |
| addTemporyAtomsDerivatives(const unsigned &jder, const Vector &der) | PLMD::multicolvar::AtomValuePack | inlineprivate |
| addTemporyBoxDerivatives(const Tensor &vir) | PLMD::multicolvar::AtomValuePack | inline |
| addValue(const unsigned &ival, const double &vv) | PLMD::multicolvar::AtomValuePack | inline |
| AtomValuePack(MultiValue &vals, MultiColvarBase const *mcolv) | PLMD::multicolvar::AtomValuePack | |
| cells_required | PLMD::multicolvar::AtomValuePack | private |
| getAbsoluteIndex(const unsigned &j) const | PLMD::multicolvar::AtomValuePack | inline |
| getIndex(const unsigned &j) const | PLMD::multicolvar::AtomValuePack | inline |
| getNumberOfAtoms() const | PLMD::multicolvar::AtomValuePack | inline |
| getNumberOfDerivatives() const | PLMD::multicolvar::AtomValuePack | inline |
| getPosition(const unsigned &) | PLMD::multicolvar::AtomValuePack | inline |
| getUnderlyingMultiValue() | PLMD::multicolvar::AtomValuePack | inline |
| getValue(const unsigned &) const | PLMD::multicolvar::AtomValuePack | inline |
| indices | PLMD::multicolvar::AtomValuePack | private |
| LocalAverage class | PLMD::multicolvar::AtomValuePack | friend |
| MultiColvarBase class | PLMD::multicolvar::AtomValuePack | friend |
| myatoms | PLMD::multicolvar::AtomValuePack | private |
| mycolv | PLMD::multicolvar::AtomValuePack | private |
| myvals | PLMD::multicolvar::AtomValuePack | private |
| natoms | PLMD::multicolvar::AtomValuePack | private |
| setAtom(const unsigned &j, const unsigned &ind) | PLMD::multicolvar::AtomValuePack | inline |
| setAtomIndex(const unsigned &j, const unsigned &ind) | PLMD::multicolvar::AtomValuePack | inline |
| setIndex(const unsigned &, const unsigned &) | PLMD::multicolvar::AtomValuePack | inline |
| setNumberOfAtoms(const unsigned &) | PLMD::multicolvar::AtomValuePack | inline |
| setupAtomsFromLinkCells(const std::vector< unsigned > &cind, const Vector &cpos, const LinkCells &linkcells) | PLMD::multicolvar::AtomValuePack | |
| setValue(const unsigned &, const double &) | PLMD::multicolvar::AtomValuePack | inline |
| sort_vector | PLMD::multicolvar::AtomValuePack | private |
| updateDynamicList() | PLMD::multicolvar::AtomValuePack | inline |
| updateUsingIndices() | PLMD::multicolvar::AtomValuePack | |