This is the complete list of members for PLMD::RMSDCoreData, including all inherited members.
| alEqDis | PLMD::RMSDCoreData | private |
| align | PLMD::RMSDCoreData | private |
| calcPositionsCenter() | PLMD::RMSDCoreData | inline |
| calcReferenceCenter() | PLMD::RMSDCoreData | inline |
| cpositions | PLMD::RMSDCoreData | private |
| cpositions_is_calculated | PLMD::RMSDCoreData | private |
| cpositions_is_removed | PLMD::RMSDCoreData | private |
| creference | PLMD::RMSDCoreData | private |
| creference_is_calculated | PLMD::RMSDCoreData | private |
| creference_is_removed | PLMD::RMSDCoreData | private |
| d | PLMD::RMSDCoreData | private |
| ddist_drotation | PLMD::RMSDCoreData | private |
| ddist_drr01 | PLMD::RMSDCoreData | private |
| displace | PLMD::RMSDCoreData | private |
| dist | PLMD::RMSDCoreData | private |
| distanceIsMSD | PLMD::RMSDCoreData | private |
| doCoreCalc(bool safe, bool alEqDis, bool only_rotation=false) | PLMD::RMSDCoreData | |
| doCoreCalcWithCloseStructure(bool safe, bool alEqDis, const Tensor &rotationPosClose, const Tensor &rotationRefClose, std::array< std::array< Tensor, 3 >, 3 > &drotationPosCloseDrr01) | PLMD::RMSDCoreData | |
| drotation_drr01 | PLMD::RMSDCoreData | private |
| eigenvals | PLMD::RMSDCoreData | private |
| eigenvecs | PLMD::RMSDCoreData | private |
| getAlignedPositionsToReference() | PLMD::RMSDCoreData | |
| getAlignedReferenceToPositions() | PLMD::RMSDCoreData | |
| getCenteredPositions() | PLMD::RMSDCoreData | |
| getCenteredReference() | PLMD::RMSDCoreData | |
| getDDistanceDPositions() | PLMD::RMSDCoreData | |
| getDDistanceDReference() | PLMD::RMSDCoreData | |
| getDDistanceDReferenceSOMA() | PLMD::RMSDCoreData | |
| getDistance(bool squared) | PLMD::RMSDCoreData | |
| getDRotationDPositions(bool inverseTransform=false) | PLMD::RMSDCoreData | |
| getDRotationDReference(bool inverseTransform=false) | PLMD::RMSDCoreData | |
| getDRotationDRr01() const | PLMD::RMSDCoreData | |
| getPositionsCenter() | PLMD::RMSDCoreData | |
| getPositionsCenterIsRemoved() | PLMD::RMSDCoreData | inline |
| getReferenceCenter() | PLMD::RMSDCoreData | |
| getReferenceCenterIsRemoved() | PLMD::RMSDCoreData | inline |
| getRotationMatrixPositionsToReference() | PLMD::RMSDCoreData | |
| getRotationMatrixReferenceToPositions() | PLMD::RMSDCoreData | |
| hasDistance | PLMD::RMSDCoreData | private |
| isInitialized | PLMD::RMSDCoreData | private |
| positions | PLMD::RMSDCoreData | private |
| reference | PLMD::RMSDCoreData | private |
| retrieve_only_rotation | PLMD::RMSDCoreData | private |
| RMSDCoreData(const std::vector< double > &a, const std::vector< double > &d, const std::vector< Vector > &p, const std::vector< Vector > &r, Vector &cp, Vector &cr) | PLMD::RMSDCoreData | inline |
| RMSDCoreData(const std::vector< double > &a, const std::vector< double > &d, const std::vector< Vector > &p, const std::vector< Vector > &r) | PLMD::RMSDCoreData | inline |
| rotation | PLMD::RMSDCoreData | private |
| rr00 | PLMD::RMSDCoreData | private |
| rr11 | PLMD::RMSDCoreData | private |
| safe | PLMD::RMSDCoreData | private |
| setPositionsCenter(Vector v) | PLMD::RMSDCoreData | inline |
| setPositionsCenterIsRemoved(bool t) | PLMD::RMSDCoreData | inline |
| setReferenceCenter(Vector v) | PLMD::RMSDCoreData | inline |
| setReferenceCenterIsRemoved(bool t) | PLMD::RMSDCoreData | inline |
1.13.2